| Round | Overall | Player |
|---|---|---|
| 1 | 9th | C Ivan Rodriguez Tex |
| 2 | 16th | OF Barry Bonds SF |
| 3 | 33rd | 1B Jim Thome Cle |
| 4 | 40th | 3B Jeff Cirillo Col |
| 5 | 57th | RP Armando Benitez NYN |
| 6 | 64th | 2B Ray Durham ChA |
| 7 | 81st | 1B Sean Casey Cin |
| 8 | 88th | SP Bartolo Colon Cle |
| 9 | 105th | OF Brian Jordan Atl |
| 10 | 112th | SP Tim Hudson Oak |
| 11 | 129th | SS Neifi Perez Col |
| 12 | 136th | OF Kenny Lofton Cle |
| 13 | 153rd | SP Freddy Garcia Sea |
| 14 | 160th | SP Russ Ortiz SF |
| 15 | 177th | OF Jermaine Dye KC |
| 16 | 184th | SP Aaron Sele Sea |
| 17 | 201st | SP Sidney Ponson Bal |
| 18 | 208th | SP Pat Hentgen StL |
| 19 | 225th | SP Darren Dreifort LA |
| 20 | 232nd | 3B Phil Nevin SD |
| 21 | 249th | SP Octavio Dotel Hou |
| 22 | 256th | SP Javier Vazquez Mon |
| 23 | 273rd | OF Preston Wilson Fla |
| 24 | 280th | 1B J.T. Snow SF |
| 25 | 297th | SP Brian Moehler Det |
| 26 | 304th | SP Robert Person Phi |
| 27 | 321st | C Damian Miller Ari |