| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 1B Mark McGwire StL |
| 2 | 14th | 1B Rafael Palmeiro Tex |
| 3 | 35th | RP Ugueth Urbina Mon |
| 4 | 38th | OF Raul Mondesi Tor |
| 5 | 59th | OF Carlos Beltran KC |
| 6 | 62nd | SP Mike Mussina Bal |
| 7 | 83rd | SS Edgar Renteria StL |
| 8 | 86th | 3B Adrian Beltre LA |
| 9 | 107th | OF Doug Glanville Phi |
| 10 | 110th | C Jason Varitek Bos |
| 11 | 131st | SP Andy Ashby Phi |
| 12 | 134th | SP Todd Stottlemyre Ari |
| 13 | 155th | SP Kerry Wood ChN |
| 14 | 158th | 3B Matt Williams Ari |
| 15 | 179th | RP Anthony Alford Fla |
| 16 | 182nd | SP Jose Rosado KC |
| 17 | 203rd | 2B Homer Bush Tor |
| 18 | 206th | RP Ricky Bottalico KC |
| 19 | 227th | OF Juan Encarnacion Det |
| 20 | 230th | SP Brian Anderson Ari |
| 21 | 251st | 1B Mark Grace ChN |
| 22 | 254th | SP Justin Thompson Tex |
| 23 | 275th | C Eli Marrero StL |
| 24 | 278th | OF Bob Higginson Det |
| 25 | 299th | 3B Scott Brosius NYA |
| 26 | 302nd | OF Mark Quinn KC |
| 27 | 323rd | RP Orber Moreno KC |