| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | 1B Mark McGwire StL |
| 3 | 25th | 1B Frank Thomas ChA |
| 4 | 48th | SP Bartolo Colon Cle |
| 5 | 49th | SP Curt Schilling Ari |
| 6 | 72nd | 3B Fernando Tatis Mon |
| 7 | 73rd | 1B Pat Burrell Phi |
| 8 | 96th | RP Matt Mantei Ari |
| 9 | 97th | RP Keith Foulke ChA |
| 10 | 120th | OF Lance Berkman Hou |
| 11 | 121st | SP Kerry Wood ChN |
| 12 | 144th | OF J.D. Drew StL |
| 13 | 145th | SP Andy Ashby LA |
| 14 | 168th | 2B Luis Castillo Fla |
| 15 | 169th | OF Gabe Kapler Tex |
| 16 | 192nd | RP Tom Gordon ChN |
| 17 | 193rd | C Jason Varitek Bos |
| 18 | 216th | 2B Randy Velarde Tex |
| 19 | 217th | SP Jarrod Washburn Ana |
| 20 | 240th | 3B Alfonso Soriano NYA |
| 21 | 241st | SP Cal Eldred ChA |
| 22 | 264th | SP Rob Bell Cin |
| 23 | 265th | C Damian Miller Ari |
| 24 | 288th | OF Roger Cedeno Det |
| 25 | 289th | 1B Chris Richard Bal |
| 26 | 312th | SS Geoff Blum Mon |
| 27 | 313th | SP Brian Bohanon Col |
| 28 | 336th | RP Steve Karsay Cle |
| 29 | 337th | RP Wade Miller Hou |