| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SP Pedro Martinez Bos |
| 2 | 23rd | SP Kevin Brown LA |
| 3 | 26th | SS Miguel Tejada Oak |
| 4 | 47th | 3B Jeff Cirillo Col |
| 5 | 50th | 3B Tony Batista Tor |
| 6 | 71st | SP Roger Clemens NYA |
| 7 | 74th | 1B Sean Casey Cin |
| 8 | 95th | SP Orlando Hernandez NYA |
| 9 | 98th | SP Chuck Finley Cle |
| 10 | 119th | OF Preston Wilson Fla |
| 11 | 122nd | OF Ben Grieve TB |
| 12 | 143rd | SP Javier Vazquez Mon |
| 13 | 146th | C Ben Petrick Col |
| 14 | 167th | SP Rick Reed NYN |
| 15 | 170th | 2B Eric Young ChN |
| 16 | 191st | 3B Mike Lowell Fla |
| 17 | 194th | SP Robert Person Phi |
| 18 | 215th | SP Adam Eaton SD |
| 19 | 218th | SS Jimmy Rollins Phi |
| 20 | 239th | SP Chuck Smith Fla |
| 21 | 242nd | OF Ray Lankford StL |
| 22 | 263rd | 1B Lee Stevens Mon |
| 23 | 266th | SP Kevin Tapani ChN |
| 24 | 287th | OF Matt Stairs ChN |
| 25 | 290th | OF Todd Hollandsworth Col |
| 26 | 311th | 2B Warren Morris Pit |
| 27 | 314th | C Ben Davis SD |
| 28 | 335th | OF Travis Lee Phi |
| 29 | 338th | OF Jay Payton NYN |