| Round | Overall | Player |
|---|---|---|
| 1 | 8th | SS Derek Jeter NYA |
| 2 | 17th | 2B Roberto Alomar NYN |
| 3 | 32nd | RP Trevor Hoffman SD |
| 4 | 41st | RP Armando Benitez NYN |
| 5 | 56th | OF Gary Sheffield LA |
| 6 | 65th | 1B Mike Sweeney KC |
| 7 | 80th | SP Kevin Millwood Atl |
| 8 | 89th | SP Andy Pettitte NYA |
| 9 | 104th | OF Shannon Stewart Tor |
| 10 | 113th | SP Freddy Garcia Sea |
| 11 | 128th | C Javy Lopez Atl |
| 12 | 137th | DH Brad Fullmer Tor |
| 13 | 152nd | OF Carlos Lee ChA |
| 14 | 161st | SP Russ Ortiz SF |
| 15 | 176th | 3B Dean Palmer Det |
| 16 | 185th | SP Glendon Rusch NYN |
| 17 | 200th | SP Jose Lima Hou |
| 18 | 209th | C Darrin Fletcher Tor |
| 19 | 224th | OF Brian Jordan Atl |
| 20 | 233rd | SP Jamey Wright Mil |
| 21 | 248th | SP Omar Daal Phi |
| 22 | 257th | 1B David Segui Bal |
| 23 | 272nd | SP Jeff Suppan KC |
| 24 | 281st | SP Brad Penny Fla |
| 25 | 296th | SS Deivi Cruz Det |
| 26 | 305th | 3B Chris Stynes Bos |
| 27 | 320th | 2B Adam Kennedy Ana |
| 28 | 329th | OF Troy O'Leary Bos |
| 29 | 344th | C Eddie Taubensee Cle |