| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Vladimir Guerrero Mon |
| 2 | 13th | 3B Chipper Jones Atl |
| 3 | 36th | SP Tim Hudson Oak |
| 4 | 37th | OF Juan Gonzalez Cle |
| 5 | 60th | 2B Jose Vidro Mon |
| 6 | 61st | SP David Wells ChA |
| 7 | 84th | RP Ugueth Urbina Mon |
| 8 | 85th | 1B Richie Sexson Mil |
| 9 | 108th | OF Cliff Floyd Fla |
| 10 | 109th | RP Bob Wickman Cle |
| 11 | 132nd | RP Troy Percival Ana |
| 12 | 133rd | 3B Matt Williams Ari |
| 13 | 156th | SP Eric Milton Min |
| 14 | 157th | 1B Eric Karros LA |
| 15 | 180th | SP Shawn Estes SF |
| 16 | 181st | SP Brian Anderson Ari |
| 17 | 204th | OF Jeffrey Hammonds Mil |
| 18 | 205th | SS Neifi Perez Col |
| 19 | 228th | SP Carl Pavano Mon |
| 20 | 229th | C Brook Fordyce Bal |
| 21 | 252nd | 2B Bret Boone Sea |
| 22 | 253rd | SP Tony Armas Jr. Mon |
| 23 | 276th | SP Garrett Stephenson StL |
| 24 | 277th | 3B Michael Barrett Mon |
| 25 | 300th | OF Dmitri Young Cin |
| 26 | 301st | RP Jose Mesa Phi |
| 27 | 324th | 3B Tony Fernandez Mil |
| 28 | 325th | SP Blake Stein KC |
| 29 | 348th | OF Dante Bichette Bos |