| Round | Overall | Player |
|---|---|---|
| 1 | 6th |
OF
Vladimir Guerrero
|
| 2 | 19th |
OF
Sammy Sosa
|
| 3 | 30th |
RP
Armando Benitez
|
| 4 | 43rd |
3B
Eric Chavez
|
| 5 | 54th |
SP
Bartolo Colon
|
| 6 | 67th |
OF
Johnny Damon
|
| 7 | 78th |
SP
Kris Benson
|
| 8 | 91st |
OF
Raul Mondesi
|
| 9 | 102nd |
SP
Rick Ankiel
|
| 10 | 115th |
SP
Freddy Garcia
|
| 11 | 126th | OF Cliff Floyd |
| 12 | 139th |
RP
Billy Wagner
|
| 13 | 150th |
3B
Robin Ventura
|
| 14 | 163rd |
OF
Carlos Beltran
|
| 15 | 174th | 1B Derrek Lee |
| 16 | 187th |
SP
Rick Reed
|
| 17 | 198th |
SS
Tony Womack
|
| 18 | 211th |
SP
LaTroy Hawkins
|
| 19 | 222nd |
OF
Ruben Mateo
|
| 20 | 235th |
C
Ramon Hernandez
|
| 21 | 246th |
OF
Delino DeShields
|
| 22 | 259th |
SP
Tomo Ohka
|
| 23 | 270th |
2B
Jerry Hairston Jr.
|
| 24 | 283rd |
SP
Mark Redman
|
| 25 | 294th |
RP
Steve Karsay
|
| 26 | 307th | SP A.J. Burnett |
| 27 | 318th |
SP
Britt Reames
|
| 28 | 331st |
SS
Carlos Guillen
|
| 29 | 342nd |
RP
Scott Strickland
|