| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 3B Chipper Jones Atl |
| 2 | 13th | SS Derek Jeter NYA |
| 3 | 36th | 2B Edgardo Alfonzo NYN |
| 4 | 37th | RP Trevor Hoffman SD |
| 5 | 60th | OF Larry Walker Col |
| 6 | 61st | RP Derek Lowe Bos |
| 7 | 84th | OF Tim Salmon Ana |
| 8 | 85th | DH Edgar Martinez Sea |
| 9 | 108th | OF Preston Wilson Fla |
| 10 | 109th | SP Rick Helling Tex |
| 11 | 132nd | OF Rusty Greer Tex |
| 12 | 133rd | RP Jeff Shaw LA |
| 13 | 156th | SP Dustin Hermanson StL |
| 14 | 157th | SP Kevin Appier NYN |
| 15 | 180th | OF Greg Vaughn TB |
| 16 | 181st | 1B Kevin Young Pit |
| 17 | 204th | C Ben Petrick Col |
| 18 | 205th | SP Ismael Valdez Ana |
| 19 | 228th | SP Hideo Nomo Bos |
| 20 | 229th | SP Kenny Rogers Tex |
| 21 | 252nd | 3B Todd Zeile NYN |
| 22 | 253rd | OF Jose Valentin ChA |
| 23 | 276th | 3B Corey Koskie Min |
| 24 | 277th | SP Jeff Suppan KC |
| 25 | 300th | 2B Bret Boone Sea |
| 26 | 301st | SS Orlando Cabrera Mon |
| 27 | 324th | OF Dmitri Young Cin |
| 28 | 325th | SP Kirk Rueter SF |
| 29 | 348th | C John Flaherty TB |