| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SP Pedro Martinez Bos |
| 2 | 24th | RP Mariano Rivera NYA |
| 3 | 25th | OF Bernie Williams NYA |
| 4 | 48th | OF Magglio Ordonez ChA |
| 5 | 49th | 3B Tony Batista Tor |
| 6 | 72nd | 1B Mike Sweeney KC |
| 7 | 73rd | SS Rafael Furcal Atl |
| 8 | 96th | C Javy Lopez Atl |
| 9 | 97th | 2B Craig Biggio Hou |
| 10 | 120th | SP Jeff D'Amico Mil |
| 11 | 121st | OF Luis Gonzalez Ari |
| 12 | 144th | 1B John Olerud Sea |
| 13 | 145th | SS Deivi Cruz Det |
| 14 | 168th | 2B Jay Bell Ari |
| 15 | 169th | SP Mike Sirotka Tor |
| 16 | 192nd | 3B John Valentin Bos |
| 17 | 193rd | SP Jose Mercedes Bal |
| 18 | 216th | OF Jacque Jones Min |
| 19 | 217th | C Brad Ausmus Hou |
| 20 | 240th | SP Ryan Kohlmeier Bal |
| 21 | 241st | OF Adrian Brown Pit |
| 22 | 264th | 1B Derrek Lee Fla |
| 23 | 265th | SP Todd Stottlemyre Ari |
| 24 | 288th | SP James Baldwin ChA |
| 25 | 289th | OF Doug Glanville Phi |
| 26 | 312th | SP Garrett Stephenson StL |
| 27 | 313th | OF Todd Hollandsworth Col |
| 28 | 336th | OF Eric Owens Fla |
| 29 | 337th | SP Brett Tomko Sea |