| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SS Alex Rodriguez Tex |
| 2 | 23rd | 2B Jeff Kent SF |
| 3 | 26th | C Jason Kendall Pit |
| 4 | 47th | OF Brian S. Giles Pit |
| 5 | 50th | RP Armando Benitez NYN |
| 6 | 71st | 1B Jim Thome Cle |
| 7 | 74th | OF Jermaine Dye KC |
| 8 | 95th | 3B Dean Palmer Det |
| 9 | 98th | SP Livan Hernandez SF |
| 10 | 119th | RP Anthony Alford Fla |
| 11 | 122nd | SP Chuck Finley Cle |
| 12 | 143rd | RP John Smoltz Atl |
| 13 | 146th | OF Ellis Burks Cle |
| 14 | 167th | SP Rick Reed NYN |
| 15 | 170th | SP Gil Heredia Oak |
| 16 | 191st | 1B Mo Vaughn Ana |
| 17 | 194th | SP Shawn Estes SF |
| 18 | 215th | C Mitch Meluskey Det |
| 19 | 218th | 3B Matt Williams Ari |
| 20 | 239th | 1B Fred McGriff TB |
| 21 | 242nd | SP Brian Anderson Ari |
| 22 | 263rd | 2B Chuck Knoblauch NYA |
| 23 | 266th | SS Mark Loretta Mil |
| 24 | 287th | SP Sidney Ponson Bal |
| 25 | 290th | SP Steve Trachsel NYN |
| 26 | 311th | OF Ray Lankford StL |
| 27 | 314th | OF Brady Anderson Bal |
| 28 | 335th | SP Eric Gagne LA |
| 29 | 338th | SP John Burkett Atl |