| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SS Derek Jeter NYA |
| 2 | 14th | 2B Jeff Kent SF |
| 3 | 35th | SP Chan Ho Park LA |
| 4 | 38th | 3B Jeff Cirillo Col |
| 5 | 59th | RP Todd Jones Det |
| 6 | 62nd | OF Jermaine Dye KC |
| 7 | 83rd | RP Danny Graves Cin |
| 8 | 86th | 1B Paul Konerko ChA |
| 9 | 107th | OF Preston Wilson Fla |
| 10 | 110th | C Charles Johnson Fla |
| 11 | 131st | OF Rusty Greer Tex |
| 12 | 134th | RP Curt Leskanic Mil |
| 13 | 155th | 1B Ryan Klesko SD |
| 14 | 158th | SP Rick Helling Tex |
| 15 | 179th | SP Kenny Rogers Tex |
| 16 | 182nd | SP Jim Parque ChA |
| 17 | 203rd | SP Elmer Dessens Cin |
| 18 | 206th | SP Ryan Kohlmeier Bal |
| 19 | 227th | 2B Damion Easley Det |
| 20 | 230th | OF Brian Jordan Atl |
| 21 | 251st | SP Rolando Arrojo Bos |
| 22 | 254th | SP Scott Williamson Cin |
| 23 | 275th | SS Melvin Mora Bal |
| 24 | 278th | C Ramon Hernandez Oak |
| 25 | 299th | 1B Rico Brogna Atl |
| 26 | 302nd | 3B Chris Stynes Bos |
| 27 | 323rd | OF Dmitri Young Cin |
| 28 | 326th | SP Esteban Yan TB |
| 29 | 347th | SP Andy Benes StL |