| Round | Overall | Player |
|---|---|---|
| 1 | 6th | 3B Troy Glaus Ana |
| 2 | 19th | 2B Edgardo Alfonzo NYN |
| 3 | 30th | SP Tim Hudson Oak |
| 4 | 43rd | RP John Rocker Atl |
| 5 | 54th | RP Jason Isringhausen Oak |
| 6 | 67th | SP Andy Pettitte NYA |
| 7 | 78th | 1B Pat Burrell Phi |
| 8 | 91st | C Mike Lieberthal Phi |
| 9 | 102nd | OF Shawn Green LA |
| 10 | 115th | OF Ben Grieve TB |
| 11 | 126th | OF Carlos Lee ChA |
| 12 | 139th | SS Julio Lugo Hou |
| 13 | 150th | 3B Matt Williams Ari |
| 14 | 163rd | OF Cliff Floyd Fla |
| 15 | 174th | RP Tim Crabtree Tex |
| 16 | 187th | 2B Chuck Knoblauch NYA |
| 17 | 198th | 1B Mark Grace Ari |
| 18 | 211th | C Brook Fordyce Bal |
| 19 | 222nd | SS Deivi Cruz Det |
| 20 | 235th | OF Roger Cedeno Det |
| 21 | 246th | OF Paul O'Neill NYA |
| 22 | 259th | SP Albie Lopez TB |
| 23 | 270th | SP Chris Carpenter Tor |
| 24 | 283rd | 1B Tino Martinez NYA |
| 25 | 294th | SP Ismael Valdez Ana |
| 26 | 307th | SP Kelvim Escobar Tor |
| 27 | 318th | OF Jacque Jones Min |
| 28 | 331st | OF Reggie Sanders Ari |
| 29 | 342nd | C Jason LaRue Cin |