| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | SP Greg Maddux Atl |
| 3 | 25th | SP Mike Mussina NYA |
| 4 | 48th | SP David Wells ChA |
| 5 | 49th | OF Gary Sheffield LA |
| 6 | 72nd | OF Darin Erstad Ana |
| 7 | 73rd | RP John Smoltz Atl |
| 8 | 96th | SP Orlando Hernandez NYA |
| 9 | 97th | 3B Dean Palmer Det |
| 10 | 120th | OF Luis Gonzalez Ari |
| 11 | 121st | OF Terrence Long Oak |
| 12 | 144th | 2B Jose Ortiz Oak |
| 13 | 145th | C Brad Ausmus Hou |
| 14 | 168th | 1B John Olerud Sea |
| 15 | 169th | DH John Jaha Oak |
| 16 | 192nd | 1B David Segui Bal |
| 17 | 193rd | SP Jeff Suppan KC |
| 18 | 216th | 3B Robin Ventura NYN |
| 19 | 217th | OF Delino DeShields Bal |
| 20 | 240th | 2B Adam Kennedy Ana |
| 21 | 241st | SS Rey Sanchez KC |
| 22 | 264th | SP Jamie Moyer Sea |
| 23 | 265th | SP Todd Stottlemyre Ari |
| 24 | 288th | OF Jay Payton NYN |
| 25 | 289th | SP Kent Bottenfield Hou |
| 26 | 312th | SP Pat Hentgen Bal |
| 27 | 313th | C Eddie Taubensee Cle |
| 28 | 336th | OF Gerald Williams TB |
| 29 | 337th | OF Tony Gwynn SD |