| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B Todd Helton Col |
| 2 | 18th | 1B Mark McGwire StL |
| 3 | 31st | RP Trevor Hoffman SD |
| 4 | 42nd | RP Derek Lowe Bos |
| 5 | 55th | OF Larry Walker Col |
| 6 | 66th | SP Al Leiter NYN |
| 7 | 79th | SP Darryl Kile StL |
| 8 | 90th | 3B Fernando Tatis Mon |
| 9 | 103rd | SS Barry Larkin Cin |
| 10 | 114th | OF David Justice NYA |
| 11 | 127th | SP Jeff D'Amico Mil |
| 12 | 138th | SP Aaron Sele Sea |
| 13 | 151st | 2B Todd Walker Col |
| 14 | 162nd | OF Ichiro Suzuki Sea |
| 15 | 175th | C Mitch Meluskey Det |
| 16 | 186th | SP Brad Radke Min |
| 17 | 199th | OF Carlos Beltran KC |
| 18 | 210th | SP Kevin Appier NYN |
| 19 | 223rd | OF Mark Quinn KC |
| 20 | 234th | SS Jimmy Rollins Phi |
| 21 | 247th | 2B Jay Bell Ari |
| 22 | 258th | OF Ruben Mateo Tex |
| 23 | 271st | 1B Chris Richard Bal |
| 24 | 282nd | SP Ben Sheets Mil |
| 25 | 295th | 3B Scott Brosius NYA |
| 26 | 306th | C Mike Matheny StL |
| 27 | 319th | SP Mike Sirotka Tor |
| 28 | 330th | SP Omar Daal Phi |
| 29 | 343rd | SP Brian Meadows KC |