| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 1B Carlos Delgado Tor |
| 2 | 13th | OF Manny Ramirez Bos |
| 3 | 36th | C Jason Kendall Pit |
| 4 | 37th | RP Billy Koch Tor |
| 5 | 60th | 3B Scott Rolen Phi |
| 6 | 61st | OF Bobby Abreu Phi |
| 7 | 84th | RP Bob Wickman Cle |
| 8 | 85th | RP Ugueth Urbina Mon |
| 9 | 108th | SP Scott Elarton Hou |
| 10 | 109th | SP Eric Milton Min |
| 11 | 132nd | SP Mike Hampton Col |
| 12 | 133rd | SS Omar Vizquel Cle |
| 13 | 156th | SP Jon Lieber ChN |
| 14 | 157th | OF Matt Lawton Ret |
| 15 | 180th | 2B Quilvio Veras Atl |
| 16 | 181st | SP Brian Anderson Ari |
| 17 | 204th | DH Brad Fullmer Tor |
| 18 | 205th | OF Rondell White ChN |
| 19 | 228th | 1B Kevin Young Pit |
| 20 | 229th | OF Mark Kotsay SD |
| 21 | 252nd | 3B Bill Mueller ChN |
| 22 | 253rd | 2B Ron Belliard Mil |
| 23 | 276th | SP Jose Lima Hou |
| 24 | 277th | OF Ron Gant Col |
| 25 | 300th | 3B Michael Barrett Mon |
| 26 | 301st | C Sandy Alomar Jr. ChA |
| 27 | 324th | SS Alex Gonzalez Fla |
| 28 | 325th | SP Tanyon Sturtze TB |
| 29 | 348th | SP A.J. Burnett Fla |