| Round | Overall | Player |
|---|---|---|
| 1 | 5th | C Mike Piazza NYN |
| 2 | 20th | SS Miguel Tejada Oak |
| 3 | 29th | OF Barry Bonds SF |
| 4 | 44th | 1B Frank Thomas ChA |
| 5 | 53rd | RP Matt Mantei Ari |
| 6 | 68th | RP Anthony Alford Fla |
| 7 | 77th | RP Roberto Hernandez KC |
| 8 | 92nd | OF Moises Alou Hou |
| 9 | 101st | OF Carl Everett Bos |
| 10 | 116th | OF Raul Mondesi Tor |
| 11 | 125th | SP Javier Vazquez Mon |
| 12 | 140th | 3B Joe Randa KC |
| 13 | 149th | SP Russ Ortiz SF |
| 14 | 164th | OF Ellis Burks Cle |
| 15 | 173rd | SP Shawn Estes SF |
| 16 | 188th | SP Mark Mulder Oak |
| 17 | 197th | 2B Randy Velarde Tex |
| 18 | 212th | C Ben Petrick Col |
| 19 | 221st | SP Sidney Ponson Bal |
| 20 | 236th | SS Cristian Guzman Min |
| 21 | 245th | DH Jose Canseco Ana |
| 22 | 260th | SP Denny Neagle Col |
| 23 | 269th | OF Gabe Kapler Tex |
| 24 | 284th | 3B Aramis Ramirez Pit |
| 25 | 293rd | 2B Luis Alicea KC |
| 26 | 308th | SP Cal Eldred ChA |
| 27 | 317th | 3B Todd Zeile NYN |
| 28 | 332nd | SP Octavio Dotel Hou |
| 29 | 341st | RP Jose Mesa Phi |