| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Jeff Bagwell Hou |
| 2 | 23rd | OF Ken Griffey Jr Cin |
| 3 | 26th | OF Andruw Jones Atl |
| 4 | 47th | SP Curt Schilling Ari |
| 5 | 50th | OF Juan Gonzalez Cle |
| 6 | 71st | SP Kris Benson Pit |
| 7 | 74th | 3B Eric Chavez Oak |
| 8 | 95th | RP Billy Wagner Hou |
| 9 | 98th | C Todd Hundley ChN |
| 10 | 119th | SP Darren Dreifort LA |
| 11 | 122nd | SP Freddy Garcia Sea |
| 12 | 143rd | 1B Eric Karros LA |
| 13 | 146th | RP Troy Percival Ana |
| 14 | 167th | 2B Carlos Febles KC |
| 15 | 170th | SP LaTroy Hawkins Min |
| 16 | 191st | SP Bruce Chen Phi |
| 17 | 194th | SS Neifi Perez Col |
| 18 | 215th | 1B Tony Clark Det |
| 19 | 218th | 3B Alfonso Soriano NYA |
| 20 | 239th | OF Juan Encarnacion Det |
| 21 | 242nd | SP Paul Wilson TB |
| 22 | 263rd | SP Jamey Wright Mil |
| 23 | 266th | RP Scott Strickland Mon |
| 24 | 287th | OF Mike Cameron Sea |
| 25 | 290th | SP Brad Penny Fla |
| 26 | 311th | 2B Mark Grudzielanek LA |
| 27 | 314th | C Tyler Houston Mil |
| 28 | 335th | OF Travis Lee Phi |
| 29 | 338th | 3B Tony Fernandez Mil |