| Round | Overall | Player |
|---|---|---|
| 1 | 2nd |
C
Ivan Rodriguez
|
| 2 | 23rd |
1B
Frank Thomas
|
| 3 | 26th |
3B
Scott Rolen
|
| 4 | 47th |
OF
Juan Gonzalez
|
| 5 | 50th |
OF
Bernie Williams
|
| 6 | 71st |
3B
Fernando Tatis
|
| 7 | 74th |
OF
Geoff Jenkins
|
| 8 | 95th |
RP
Jason Isringhausen
|
| 9 | 98th |
RP
Danny Graves
|
| 10 | 119th |
RP
Dave Veres
|
| 11 | 122nd |
SP
Kerry Wood
|
| 12 | 143rd |
SP
Scott Elarton
|
| 13 | 146th |
2B
Jose Ortiz
|
| 14 | 167th |
SP
Russ Ortiz
|
| 15 | 170th |
SS
Neifi Perez
|
| 16 | 191st | OF Garret Anderson |
| 17 | 194th |
OF
Russ Branyan
|
| 18 | 215th |
SP
Scott Williamson
|
| 19 | 218th |
1B
Tony Clark
|
| 20 | 239th |
2B
Damion Easley
|
| 21 | 242nd | OF Matt Lawton |
| 22 | 263rd |
SP
Andy Benes
|
| 23 | 266th |
SP
Jason Schmidt
|
| 24 | 287th |
SP
John Halama
|
| 25 | 290th |
SP
Rob Bell
|
| 26 | 311th |
SP
Steve Trachsel
|
| 27 | 314th |
SS
Carlos Guillen
|
| 28 | 335th |
OF
Derek Bell
|
| 29 | 338th |
C
Brent Mayne
|