| Round | Overall | Player |
|---|---|---|
| 1 | 9th | OF Vladimir Guerrero Mon |
| 2 | 16th | OF Ken Griffey Jr Cin |
| 3 | 33rd | SP Mike Mussina NYA |
| 4 | 40th | C Jorge Posada NYA |
| 5 | 57th | 1B Sean Casey Cin |
| 6 | 64th | OF Bobby Abreu Phi |
| 7 | 81st | SS Tony Womack Ari |
| 8 | 88th | 3B Eric Chavez Oak |
| 9 | 105th | RP Dave Veres StL |
| 10 | 112th | RP Bob Wickman Cle |
| 11 | 129th | SP Mike Hampton Col |
| 12 | 136th | RP Matt Mantei Ari |
| 13 | 153rd | 1B Pat Burrell Phi |
| 14 | 160th | SP Eric Milton Min |
| 15 | 177th | 3B Alfonso Soriano NYA |
| 16 | 184th | OF Lance Berkman Hou |
| 17 | 201st | OF Mark Quinn KC |
| 18 | 208th | SP Scott Williamson Cin |
| 19 | 225th | 2B Ron Belliard Mil |
| 20 | 232nd | SS Alex Gonzalez Tor |
| 21 | 249th | C Eddie Taubensee Cle |
| 22 | 256th | 2B Jose Offerman Bos |
| 23 | 273rd | SP Todd Ritchie Pit |
| 24 | 280th | SP Jim Parque ChA |
| 25 | 297th | RP Scott Strickland Mon |
| 26 | 304th | RP Byung-Hyun Kim Ari |
| 27 | 321st | SP Tomo Ohka Bos |
| 28 | 328th | OF Benny Agbayani NYN |
| 29 | 345th | SP Jon Garland ChA |