| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Todd Helton Col |
| 2 | 22nd | 2B Edgardo Alfonzo NYN |
| 3 | 27th | OF Brian S. Giles Pit |
| 4 | 46th | OF Richard Hidalgo Hou |
| 5 | 51st | SP Curt Schilling Ari |
| 6 | 70th | 3B Phil Nevin SD |
| 7 | 75th | OF Moises Alou Hou |
| 8 | 94th | SP Ryan Dempster Fla |
| 9 | 99th | OF Geoff Jenkins Mil |
| 10 | 118th | SS Barry Larkin Cin |
| 11 | 123rd | SP Jeff D'Amico Mil |
| 12 | 142nd | SP Javier Vazquez Mon |
| 13 | 147th | DH Brad Fullmer Tor |
| 14 | 166th | SP Andy Ashby LA |
| 15 | 171st | SP Glendon Rusch NYN |
| 16 | 190th | C Brad Ausmus Hou |
| 17 | 195th | SP Rick Ankiel StL |
| 18 | 214th | SS Rich Aurilia SF |
| 19 | 219th | SP Carl Pavano Mon |
| 20 | 238th | 3B Travis Fryman Cle |
| 21 | 243rd | SP Brian Moehler Det |
| 22 | 262nd | OF Roger Cedeno Det |
| 23 | 267th | SP Mark Redman Min |
| 24 | 286th | 2B Ron Belliard Mil |
| 25 | 291st | 1B Lee Stevens Mon |
| 26 | 310th | SP Esteban Loaiza Tor |
| 27 | 315th | OF Mike Cameron Sea |
| 28 | 334th | C Tyler Houston Mil |
| 29 | 339th | SP Doug Davis Tex |