| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | RP Mariano Rivera NYA |
| 3 | 25th | 2B Roberto Alomar NYN |
| 4 | 48th | OF Juan Gonzalez Cle |
| 5 | 49th | 3B Tony Batista Tor |
| 6 | 72nd | RP John Rocker Atl |
| 7 | 73rd | OF Carl Everett Bos |
| 8 | 96th | SP Andy Pettitte NYA |
| 9 | 97th | RP Jason Isringhausen Oak |
| 10 | 120th | SP Scott Elarton Hou |
| 11 | 121st | SP Eric Milton Min |
| 12 | 144th | OF Ben Grieve TB |
| 13 | 145th | SP Bruce Chen Phi |
| 14 | 168th | 1B Eric Karros LA |
| 15 | 169th | SP Matt Morris StL |
| 16 | 192nd | 2B Quilvio Veras Atl |
| 17 | 193rd | OF Mark Quinn KC |
| 18 | 216th | C Ramon Hernandez Oak |
| 19 | 217th | OF Terrence Long Oak |
| 20 | 240th | C Damian Miller Ari |
| 21 | 241st | OF Trot Nixon Bos |
| 22 | 264th | SP Frank Castillo Bos |
| 23 | 265th | RP Wade Miller Hou |
| 24 | 288th | SP Steve Trachsel NYN |
| 25 | 289th | 1B Erubiel Durazo Ari |
| 26 | 312th | 3B Pedro Feliz SF |
| 27 | 313th | 3B Aramis Ramirez Pit |
| 28 | 336th | SS Rey Sanchez KC |
| 29 | 337th | RP Kerry Ligtenberg Atl |