| Round | Overall | Player |
|---|---|---|
| 1 | 7th | SS Nomar Garciaparra Bos |
| 2 | 18th | SP Randy Johnson Ari |
| 3 | 31st | SP Greg Maddux Atl |
| 4 | 42nd | 2B Jose Vidro Mon |
| 5 | 55th | 3B Fernando Tatis Mon |
| 6 | 66th | RP Ugueth Urbina Mon |
| 7 | 79th | RP Billy Wagner Hou |
| 8 | 90th | OF Raul Mondesi Tor |
| 9 | 103rd | C Todd Hundley ChN |
| 10 | 114th | OF Preston Wilson Fla |
| 11 | 127th | OF Luis Gonzalez Ari |
| 12 | 138th | OF Rondell White ChN |
| 13 | 151st | 1B Tony Clark Det |
| 14 | 162nd | C Darrin Fletcher Tor |
| 15 | 175th | SP Ramon Ortiz Ana |
| 16 | 186th | OF Jeffrey Hammonds Mil |
| 17 | 199th | RP Tim Crabtree Tex |
| 18 | 210th | 1B J.T. Snow SF |
| 19 | 223rd | 3B Dean Palmer Det |
| 20 | 234th | 1B Kevin Young Pit |
| 21 | 247th | 2B Carlos Febles KC |
| 22 | 258th | OF Todd Hollandsworth Col |
| 23 | 271st | SS Deivi Cruz Det |
| 24 | 282nd | SP Tomo Ohka Bos |
| 25 | 295th | SP Andy Benes StL |
| 26 | 306th | SP Jamey Wright Mil |
| 27 | 319th | SP Jason Schmidt Pit |
| 28 | 330th | SP Ryan Glynn Tex |
| 29 | 343rd | SP Steve Woodard Cle |