| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Vladimir Guerrero Mon |
| 2 | 13th | 1B Jason Giambi Oak |
| 3 | 36th | RP Trevor Hoffman SD |
| 4 | 37th | SP Tim Hudson Oak |
| 5 | 60th | RP Billy Koch Tor |
| 6 | 61st | OF Gary Sheffield LA |
| 7 | 84th | SP Barry Zito Oak |
| 8 | 85th | OF David Justice NYA |
| 9 | 108th | OF Bob Higginson Det |
| 10 | 109th | 3B Ken Caminiti Tex |
| 11 | 132nd | 2B Jose Ortiz Oak |
| 12 | 133rd | OF J.D. Drew StL |
| 13 | 156th | SP Jon Lieber ChN |
| 14 | 157th | C Mitch Meluskey Det |
| 15 | 180th | SS Julio Lugo Hou |
| 16 | 181st | 1B Chris Richard Bal |
| 17 | 204th | SP Robert Person Phi |
| 18 | 205th | SP Mark Mulder Oak |
| 19 | 228th | 3B Corey Koskie Min |
| 20 | 229th | SP Kirk Rueter SF |
| 21 | 252nd | SS Melvin Mora Bal |
| 22 | 253rd | SP Ryan Kohlmeier Bal |
| 23 | 276th | SP Brad Penny Fla |
| 24 | 277th | SP James Baldwin ChA |
| 25 | 300th | 3B Michael Barrett Mon |
| 26 | 301st | 2B Jerry Hairston Jr. Bal |
| 27 | 324th | SP Blake Stein KC |
| 28 | 325th | C Gregg Zaun KC |
| 29 | 348th | SP Sterling Hitchcock SD |