| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 3B Chipper Jones Atl |
| 2 | 20th | 1B Mark McGwire StL |
| 3 | 29th | 1B Rafael Palmeiro Tex |
| 4 | 44th | OF Larry Walker Col |
| 5 | 53rd | SP Tom Glavine Atl |
| 6 | 68th | RP Kazuhiro Sasaki Sea |
| 7 | 77th | SP Livan Hernandez SF |
| 8 | 92nd | C Javy Lopez Atl |
| 9 | 101st | SP Mike Hampton Col |
| 10 | 116th | SP Freddy Garcia Sea |
| 11 | 125th | SP Orlando Hernandez NYA |
| 12 | 140th | RP Curt Leskanic Mil |
| 13 | 149th | OF Kenny Lofton Cle |
| 14 | 164th | 2B Jay Bell Ari |
| 15 | 173rd | OF Cliff Floyd Fla |
| 16 | 188th | 2B Chuck Knoblauch NYA |
| 17 | 197th | C Jason Varitek Bos |
| 18 | 212th | SP Ben Sheets Mil |
| 19 | 221st | SS Mike Bordick Bal |
| 20 | 236th | OF Brian Jordan Atl |
| 21 | 245th | SS Cristian Guzman Min |
| 22 | 260th | 1B Fred McGriff TB |
| 23 | 269th | SP Adam Eaton SD |
| 24 | 284th | SP Omar Daal Phi |
| 25 | 293rd | SP Jose Lima Hou |
| 26 | 308th | SS Carlos Guillen Sea |
| 27 | 317th | OF Reggie Sanders Ari |
| 28 | 332nd | DH John Jaha Oak |
| 29 | 341st | 3B Tony Fernandez Mil |