| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 1B Jeff Bagwell Hou |
| 2 | 16th | SS Derek Jeter NYA |
| 3 | 33rd | OF Bernie Williams NYA |
| 4 | 40th | 3B Scott Rolen Phi |
| 5 | 57th | RP Derek Lowe Bos |
| 6 | 64th | OF Bobby Abreu Phi |
| 7 | 81st | OF Jim Edmonds StL |
| 8 | 88th | C Charles Johnson Fla |
| 9 | 105th | RP Troy Percival Ana |
| 10 | 112th | SP Kris Benson Pit |
| 11 | 129th | SP Aaron Sele Sea |
| 12 | 136th | RP John Smoltz Atl |
| 13 | 153rd | SP Brad Radke Min |
| 14 | 160th | SP Dustin Hermanson StL |
| 15 | 177th | SP Russ Ortiz SF |
| 16 | 184th | OF Rusty Greer Tex |
| 17 | 201st | 2B Damion Easley Det |
| 18 | 208th | 2B Pokey Reese Cin |
| 19 | 225th | SP Randy Wolf Phi |
| 20 | 232nd | SP Sidney Ponson Bal |
| 21 | 249th | 3B Aaron Boone Cin |
| 22 | 256th | SP Denny Neagle Col |
| 23 | 273rd | OF Gabe Kapler Tex |
| 24 | 280th | SP Jeff Suppan KC |
| 25 | 297th | SP Mike Sirotka Tor |
| 26 | 304th | RP Jose Mesa Phi |
| 27 | 321st | 1B Mark Grace Ari |
| 28 | 328th | C Einar Diaz Cle |
| 29 | 345th | SS Orlando Cabrera Mon |