| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | 1B Frank Thomas ChA |
| 3 | 25th | OF Brian S. Giles Pit |
| 4 | 48th | RP Armando Benitez NYN |
| 5 | 49th | RP Billy Koch Tor |
| 6 | 72nd | OF Bobby Abreu Phi |
| 7 | 73rd | 3B Phil Nevin SD |
| 8 | 96th | C Javy Lopez Atl |
| 9 | 97th | OF Tim Salmon Ana |
| 10 | 120th | OF Preston Wilson Fla |
| 11 | 121st | SP Kerry Wood ChN |
| 12 | 144th | SP Aaron Sele Sea |
| 13 | 145th | SP Jeff Weaver Det |
| 14 | 168th | 2B Jay Bell Ari |
| 15 | 169th | SP Jim Parque ChA |
| 16 | 192nd | OF Gabe Kapler Tex |
| 17 | 193rd | SP Brian Moehler Det |
| 18 | 216th | SP Hideo Nomo Bos |
| 19 | 217th | SS Cristian Guzman Min |
| 20 | 240th | 2B Bret Boone Sea |
| 21 | 241st | SP Kenny Rogers Tex |
| 22 | 264th | OF Jose Valentin ChA |
| 23 | 265th | C Sandy Alomar Jr. ChA |
| 24 | 288th | 1B J.T. Snow SF |
| 25 | 289th | OF Rondell White ChN |
| 26 | 312th | SP Shane Reynolds Hou |
| 27 | 313th | 3B Joe Crede ChA |
| 28 | 336th | SP Hideki Irabu Mon |
| 29 | 337th | 3B Bill Mueller ChN |