| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Vladimir Guerrero Mon |
| 2 | 15th | 1B Jason Giambi Oak |
| 3 | 34th | RP Mariano Rivera NYA |
| 4 | 39th | SP Mike Mussina NYA |
| 5 | 58th | 3B Fernando Tatis Mon |
| 6 | 63rd | C Todd Hundley ChN |
| 7 | 82nd | SS Rafael Furcal Atl |
| 8 | 87th | SP Kevin Millwood Atl |
| 9 | 106th | 2B Quilvio Veras Atl |
| 10 | 111th | RP Todd Jones Det |
| 11 | 130th | OF Roger Cedeno Det |
| 12 | 135th | SP Eric Milton Min |
| 13 | 154th | OF Cliff Floyd Fla |
| 14 | 159th | SS Julio Lugo Hou |
| 15 | 178th | C Mitch Meluskey Det |
| 16 | 183rd | 1B David Segui Bal |
| 17 | 202nd | SP Denny Neagle Col |
| 18 | 207th | 2B Fernando Vina StL |
| 19 | 226th | SP Pete Harnisch Cin |
| 20 | 231st | 3B Mike Lowell Fla |
| 21 | 250th | SP Jose Lima Hou |
| 22 | 255th | SP LaTroy Hawkins Min |
| 23 | 274th | OF Juan Encarnacion Det |
| 24 | 279th | 1B David Ortiz Min |
| 25 | 298th | SP Jeff Suppan KC |
| 26 | 303rd | SP Osvaldo Fernandez Cin |
| 27 | 322nd | SP Esteban Loaiza Tor |
| 28 | 327th | OF Doug Glanville Phi |
| 29 | 346th | SP Chris Holt Det |