| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SP Pedro Martinez Bos |
| 2 | 23rd | 3B Chipper Jones Atl |
| 3 | 26th | C Jason Kendall Pit |
| 4 | 47th | 1B Rafael Palmeiro Tex |
| 5 | 50th | OF Juan Gonzalez Cle |
| 6 | 71st | 2B Ray Durham ChA |
| 7 | 74th | RP Keith Foulke ChA |
| 8 | 95th | OF Carl Everett Bos |
| 9 | 98th | OF Raul Mondesi Tor |
| 10 | 119th | SP Barry Zito Oak |
| 11 | 122nd | 1B Paul Konerko ChA |
| 12 | 143rd | SP Dustin Hermanson StL |
| 13 | 146th | SP Rick Helling Tex |
| 14 | 167th | SS Neifi Perez Col |
| 15 | 170th | SP Chuck Finley Cle |
| 16 | 191st | OF Lance Berkman Hou |
| 17 | 194th | 2B Todd Walker Col |
| 18 | 215th | SP Matt Morris StL |
| 19 | 218th | RP Tim Crabtree Tex |
| 20 | 239th | OF Ellis Burks Cle |
| 21 | 242nd | SP Rick Ankiel StL |
| 22 | 263rd | 3B Corey Koskie Min |
| 23 | 266th | SS Alex Gonzalez Tor |
| 24 | 287th | OF Ruben Mateo Tex |
| 25 | 290th | RP John Smoltz Atl |
| 26 | 311th | 3B Travis Fryman Cle |
| 27 | 314th | SP Ramon Ortiz Ana |
| 28 | 335th | C Mike Matheny StL |
| 29 | 338th | RP Matt Anderson Det |