| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 1B Todd Helton Col |
| 2 | 20th | OF Barry Bonds SF |
| 3 | 29th | OF Andruw Jones Atl |
| 4 | 44th | RP Robb Nen SF |
| 5 | 53rd | SP Al Leiter NYN |
| 6 | 68th | OF Moises Alou Hou |
| 7 | 77th | SP Livan Hernandez SF |
| 8 | 92nd | 2B Craig Biggio Hou |
| 9 | 101st | RP Danny Graves Cin |
| 10 | 116th | 3B Robin Ventura NYN |
| 11 | 125th | SS Tony Womack Ari |
| 12 | 140th | RP Jeff Shaw LA |
| 13 | 149th | SP Rick Reed NYN |
| 14 | 164th | DH Andres Galarraga Tex |
| 15 | 173rd | C Darrin Fletcher Tor |
| 16 | 188th | SP Woody Williams SD |
| 17 | 197th | OF Kenny Lofton Cle |
| 18 | 212th | SP Bruce Chen Phi |
| 19 | 221st | 1B John Olerud Sea |
| 20 | 236th | 2B Randy Velarde Tex |
| 21 | 245th | SS Royce Clayton ChA |
| 22 | 260th | C Damian Miller Ari |
| 23 | 269th | 3B Chris Truby Hou |
| 24 | 284th | SP Scott Williamson Cin |
| 25 | 293rd | OF Mark Quinn KC |
| 26 | 308th | SP Chuck Smith Fla |
| 27 | 317th | 1B Lee Stevens Mon |
| 28 | 332nd | SP Steve Trachsel NYN |
| 29 | 341st | OF Todd Hollandsworth Col |