| Round | Overall | Player |
|---|---|---|
| 1 | 4th | SP Randy Johnson Ari |
| 2 | 21st | SS Derek Jeter NYA |
| 3 | 28th | SP Greg Maddux Atl |
| 4 | 45th | RP Trevor Hoffman SD |
| 5 | 52nd | 1B Mike Sweeney KC |
| 6 | 69th | C Mike Lieberthal Phi |
| 7 | 76th | 3B Matt Williams Ari |
| 8 | 93rd | OF Shannon Stewart Tor |
| 9 | 100th | OF J.D. Drew StL |
| 10 | 117th | RP Matt Mantei Ari |
| 11 | 124th | 2B Ron Belliard Mil |
| 12 | 141st | SP Jeff D'Amico Mil |
| 13 | 148th | OF Greg Vaughn TB |
| 14 | 165th | OF Matt Stairs ChN |
| 15 | 172nd | 3B Vinny Castilla Hou |
| 16 | 189th | 1B Mark Grace Ari |
| 17 | 196th | SP Robert Person Phi |
| 18 | 213th | 2B Mark Grudzielanek LA |
| 19 | 220th | SP Sterling Hitchcock SD |
| 20 | 237th | SP Mike Sirotka Tor |
| 21 | 244th | C Eddie Taubensee Cle |
| 22 | 261st | SS Ricky Gutierrez ChN |
| 23 | 268th | OF Jeffrey Hammonds Mil |
| 24 | 285th | SP Octavio Dotel Hou |
| 25 | 292nd | SP Cal Eldred ChA |
| 26 | 309th | SP Garrett Stephenson StL |
| 27 | 316th | DH John Jaha Oak |
| 28 | 333rd | RP Paul Shuey Cle |
| 29 | 340th | RP Kerry Ligtenberg Atl |