| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Ken Griffey Jr Cin |
| 2 | 14th | 1B Jeff Bagwell Hou |
| 3 | 35th | 2B Edgardo Alfonzo NYN |
| 4 | 38th | SP Darryl Kile StL |
| 5 | 59th | OF Larry Walker Col |
| 6 | 62nd | 1B Ryan Klesko SD |
| 7 | 83rd | RP Billy Wagner Hou |
| 8 | 86th | 3B Aramis Ramirez Pit |
| 9 | 107th | DH Edgar Martinez Sea |
| 10 | 110th | C Ben Petrick Col |
| 11 | 131st | RP Bob Wickman Cle |
| 12 | 134th | SP Freddy Garcia Sea |
| 13 | 155th | SS Jimmy Rollins Phi |
| 14 | 158th | OF Luis Gonzalez Ari |
| 15 | 179th | OF Josh Hamilton TB |
| 16 | 182nd | OF Matt Lawton Ret |
| 17 | 203rd | SP Albie Lopez TB |
| 18 | 206th | 2B Pokey Reese Cin |
| 19 | 227th | RP Wade Miller Hou |
| 20 | 230th | OF Carlos Beltran KC |
| 21 | 251st | SP Tanyon Sturtze TB |
| 22 | 254th | C Brook Fordyce Bal |
| 23 | 275th | SP Britt Reames Mon |
| 24 | 278th | SP Tomo Ohka Bos |
| 25 | 299th | OF Juan Pierre Col |
| 26 | 302nd | 3B Aaron Boone Cin |
| 27 | 323rd | 1B Mo Vaughn Ana |
| 28 | 326th | SP Bryan Rekar TB |
| 29 | 347th | SP Esteban Yan TB |