| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Todd Helton Col |
| 2 | 22nd | SS Nomar Garciaparra Bos |
| 3 | 27th | OF Juan Gonzalez Cle |
| 4 | 46th | 2B Ray Durham ChA |
| 5 | 51st | 3B Phil Nevin SD |
| 6 | 70th | RP Keith Foulke ChA |
| 7 | 75th | C Ben Petrick Col |
| 8 | 94th | SP Ryan Dempster Fla |
| 9 | 99th | RP Ugueth Urbina Mon |
| 10 | 118th | OF Tim Salmon Ana |
| 11 | 123rd | SP Kerry Wood ChN |
| 12 | 142nd | SP Aaron Sele Sea |
| 13 | 147th | OF Ellis Burks Cle |
| 14 | 166th | OF Carlos Beltran KC |
| 15 | 171st | SP Shawn Estes SF |
| 16 | 190th | OF Todd Hollandsworth Col |
| 17 | 195th | SP Brad Penny Fla |
| 18 | 214th | 3B Alfonso Soriano NYA |
| 19 | 219th | 1B Chris Richard Bal |
| 20 | 238th | SS Mike Bordick Bal |
| 21 | 243rd | 1B Lee Stevens Mon |
| 22 | 262nd | SP Chris Carpenter Tor |
| 23 | 267th | C Brook Fordyce Bal |
| 24 | 286th | SP Jamey Wright Mil |
| 25 | 291st | SS Damian Jackson SD |
| 26 | 310th | SP Jose Mercedes Bal |
| 27 | 315th | 2B Jerry Hairston Jr. Bal |
| 28 | 334th | SP John Burkett Atl |
| 29 | 339th | SP Jose Rosado KC |