| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | 1B Mike Sweeney KC |
| 3 | 25th | 1B Sean Casey Cin |
| 4 | 48th | SP David Wells ChA |
| 5 | 49th | OF Bobby Abreu Phi |
| 6 | 72nd | OF Moises Alou Hou |
| 7 | 73rd | SP Barry Zito Oak |
| 8 | 96th | RP Matt Mantei Ari |
| 9 | 97th | RP Jeff Shaw LA |
| 10 | 120th | RP Jason Isringhausen Oak |
| 11 | 121st | SP Eric Milton Min |
| 12 | 144th | OF Cliff Floyd Fla |
| 13 | 145th | SP Rick Reed NYN |
| 14 | 168th | SP Jeff Weaver Det |
| 15 | 169th | C Jason Varitek Bos |
| 16 | 192nd | 2B Damion Easley Det |
| 17 | 193rd | 3B Mike Lowell Fla |
| 18 | 216th | 2B Jose Ortiz Oak |
| 19 | 217th | 3B Corey Koskie Min |
| 20 | 240th | SP Adam Eaton SD |
| 21 | 241st | OF Mark Quinn KC |
| 22 | 264th | OF Ruben Mateo Tex |
| 23 | 265th | SP Jeff Suppan KC |
| 24 | 288th | SP Esteban Loaiza Tor |
| 25 | 289th | C Gregg Zaun KC |
| 26 | 312th | OF Jay Payton NYN |
| 27 | 313th | SP Albie Lopez TB |
| 28 | 336th | SS Orlando Cabrera Mon |
| 29 | 337th | 1B Brian Daubach Bos |