| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Vladimir Guerrero Mon |
| 2 | 18th | 2B Roberto Alomar NYN |
| 3 | 31st | SS Edgar Renteria StL |
| 4 | 42nd | SP Tom Glavine Atl |
| 5 | 55th | 3B Fernando Tatis Mon |
| 6 | 66th | RP Derek Lowe Bos |
| 7 | 79th | DH Brad Fullmer Tor |
| 8 | 90th | C Darrin Fletcher Tor |
| 9 | 103rd | OF Shannon Stewart Tor |
| 10 | 114th | 1B Ryan Klesko SD |
| 11 | 127th | RP Bob Wickman Cle |
| 12 | 138th | SP Matt Morris StL |
| 13 | 151st | OF Matt Lawton Ret |
| 14 | 162nd | SP Robert Person Phi |
| 15 | 175th | OF Ichiro Suzuki Sea |
| 16 | 186th | SP Scott Williamson Cin |
| 17 | 199th | SP Matt Clement Fla |
| 18 | 210th | SP Rick Ankiel StL |
| 19 | 223rd | 3B Todd Zeile NYN |
| 20 | 234th | 3B Vinny Castilla Hou |
| 21 | 247th | 2B Carlos Febles KC |
| 22 | 258th | SS Deivi Cruz Det |
| 23 | 271st | OF Dmitri Young Cin |
| 24 | 282nd | C Jason LaRue Cin |
| 25 | 295th | SP Ryan Kohlmeier Bal |
| 26 | 306th | SP Paul Wilson TB |
| 27 | 319th | OF Reggie Sanders Ari |
| 28 | 330th | RP Byung-Hyun Kim Ari |
| 29 | 343rd | SP Paul Abbott Sea |