| Round | Overall | Player |
|---|---|---|
| 1 | 4th | C Ivan Rodriguez Tex |
| 2 | 21st | SP Greg Maddux Atl |
| 3 | 28th | 3B Scott Rolen Phi |
| 4 | 45th | RP Armando Benitez NYN |
| 5 | 52nd | OF Brian S. Giles Pit |
| 6 | 69th | RP Billy Koch Tor |
| 7 | 76th | OF Jim Edmonds StL |
| 8 | 93rd | 1B Pat Burrell Phi |
| 9 | 100th | SP Kris Benson Pit |
| 10 | 117th | SS Omar Vizquel Cle |
| 11 | 124th | 2B Todd Walker Col |
| 12 | 141st | SP Javier Vazquez Mon |
| 13 | 148th | OF Ben Grieve TB |
| 14 | 165th | RP Curt Leskanic Mil |
| 15 | 172nd | SP Dustin Hermanson StL |
| 16 | 189th | OF Jeffrey Hammonds Mil |
| 17 | 196th | 1B John Olerud Sea |
| 18 | 213th | 2B Jay Bell Ari |
| 19 | 220th | OF Rusty Greer Tex |
| 20 | 237th | SP Ben Sheets Mil |
| 21 | 244th | 3B John Valentin Bos |
| 22 | 261st | OF Roger Cedeno Det |
| 23 | 268th | C Damian Miller Ari |
| 24 | 285th | SP Denny Neagle Col |
| 25 | 292nd | SS Ricky Gutierrez ChN |
| 26 | 309th | SP Tony Armas Jr. Mon |
| 27 | 316th | SP Tomo Ohka Bos |
| 28 | 333rd | OF Troy O'Leary Bos |
| 29 | 340th | SP Blake Stein KC |