| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 3B Troy Glaus Ana |
| 2 | 13th | 1B Carlos Delgado Tor |
| 3 | 36th | RP Mariano Rivera NYA |
| 4 | 37th | RP Trevor Hoffman SD |
| 5 | 60th | C Jorge Posada NYA |
| 6 | 61st | SP Roger Clemens NYA |
| 7 | 84th | OF Carl Everett Bos |
| 8 | 85th | OF Shawn Green LA |
| 9 | 108th | OF Luis Gonzalez Ari |
| 10 | 109th | OF Preston Wilson Fla |
| 11 | 132nd | SP Freddy Garcia Sea |
| 12 | 133rd | OF Carlos Lee ChA |
| 13 | 156th | 2B Quilvio Veras Atl |
| 14 | 157th | SP Jon Lieber ChN |
| 15 | 180th | SP Woody Williams SD |
| 16 | 181st | SS Rich Aurilia SF |
| 17 | 204th | SP LaTroy Hawkins Min |
| 18 | 205th | 3B Joe Randa KC |
| 19 | 228th | 1B Derrek Lee Fla |
| 20 | 229th | SP Chuck Smith Fla |
| 21 | 252nd | 2B Randy Velarde Tex |
| 22 | 253rd | SP Jamie Moyer Sea |
| 23 | 276th | SS Melvin Mora Bal |
| 24 | 277th | SP Frank Castillo Bos |
| 25 | 300th | C Tyler Houston Mil |
| 26 | 301st | SP Steve Trachsel NYN |
| 27 | 324th | SP Cal Eldred ChA |
| 28 | 325th | OF Mark Kotsay SD |
| 29 | 348th | RP Scott Strickland Mon |