| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SS Derek Jeter NYA |
| 2 | 16th | C Jason Kendall Pit |
| 3 | 33rd | SP Mike Mussina NYA |
| 4 | 40th | 1B Rafael Palmeiro Tex |
| 5 | 57th | RP Robb Nen SF |
| 6 | 64th | OF Magglio Ordonez ChA |
| 7 | 81st | OF Raul Mondesi Tor |
| 8 | 88th | 3B Eric Chavez Oak |
| 9 | 105th | RP Dave Veres StL |
| 10 | 112th | DH Andres Galarraga Tex |
| 11 | 129th | SP Darren Dreifort LA |
| 12 | 136th | OF J.D. Drew StL |
| 13 | 153rd | SP Glendon Rusch NYN |
| 14 | 160th | SP Bruce Chen Phi |
| 15 | 177th | OF Russ Branyan Cle |
| 16 | 184th | 1B Kevin Young Pit |
| 17 | 201st | SP Pete Harnisch Cin |
| 18 | 208th | C Mitch Meluskey Det |
| 19 | 225th | 2B Pokey Reese Cin |
| 20 | 232nd | SP Mark Mulder Oak |
| 21 | 249th | SP Britt Reames Mon |
| 22 | 256th | OF Terrence Long Oak |
| 23 | 273rd | 2B Mark Grudzielanek LA |
| 24 | 280th | SS Alex Gonzalez Tor |
| 25 | 297th | SP Rob Bell Cin |
| 26 | 304th | RP Wade Miller Hou |
| 27 | 321st | 3B Herbert Perry ChA |
| 28 | 328th | RP Ricky Bottalico Phi |
| 29 | 345th | SP David Cone Bos |