| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 3B Chipper Jones Atl |
| 2 | 14th | OF Sammy Sosa ChN |
| 3 | 35th | SP Tim Hudson Oak |
| 4 | 38th | OF Richard Hidalgo Hou |
| 5 | 59th | RP Kazuhiro Sasaki Sea |
| 6 | 62nd | 1B Mike Sweeney KC |
| 7 | 83rd | SS Omar Vizquel Cle |
| 8 | 86th | RP Billy Wagner Hou |
| 9 | 107th | C Ben Petrick Col |
| 10 | 110th | SP Barry Zito Oak |
| 11 | 131st | SP Rick Helling Tex |
| 12 | 134th | OF Tim Salmon Ana |
| 13 | 155th | RP Troy Percival Ana |
| 14 | 158th | OF Carlos Lee ChA |
| 15 | 179th | C Darrin Fletcher Tor |
| 16 | 182nd | 2B Luis Castillo Fla |
| 17 | 203rd | SP Ramon Ortiz Ana |
| 18 | 206th | 3B Alfonso Soriano NYA |
| 19 | 227th | 1B John Olerud Sea |
| 20 | 230th | SP Ben Sheets Mil |
| 21 | 251st | OF Brian Jordan Atl |
| 22 | 254th | 2B Damion Easley Det |
| 23 | 275th | SS Royce Clayton ChA |
| 24 | 278th | RP Scott Schoeneweis Ana |
| 25 | 299th | SP Hideo Nomo Bos |
| 26 | 302nd | RP Wade Miller Hou |
| 27 | 323rd | OF Jose Valentin ChA |
| 28 | 326th | 1B Mark Grace Ari |
| 29 | 347th | SP Octavio Dotel Hou |